Healthy Watersheds Resilient Baylands

Through the EPA-funded Healthy Watersheds Resilient Baylands project, SFEI and sixteen partner organizations are developing multi-benefit tools to enhance climate change resilience in San Francisco Bay. Healthy Watersheds Resilient Baylands has two major components: Multi-benefit Urban Greening and Tidal Wetlands Restoration. Through both components, we have developed strategies that inform  policy, planning, and design of innovative implementation projects.

SFEI Unoccupied Aerial Systems

SFEI has developed novel, cost-effective solutions to costly problems. In particular, our work with drones or Unoccupied Aerial Systems (UAS) has yielded very promising results. We have used UAS to address a number of scientific challenges and use cases. SFEI applications of UAS include, wetland monitoring, restoration monitoring, sediment volume estimations, and trash surveys leveraging machine learning algorithms. In the course of our use of UAS, we have derived some useful analyses on the technology that lend the resulting products credibility and reliability.

Klamath Basin Monitoring Program

Over the past decade, the Klamath Basin has been in the forefront of national attention due to contentious resource issues related to water allocation, water quality, proposed dam removal, and protection and recovery of threatened and endangered species.

GreenPlan-IT featured in the newsletter of the National Water Quality Monitoring Council

GreenPlan-IT, a toolset created in a collaboration with SFEP, US EPA, and local partners, has been featured in the newsletter of the National Water Quality Monitoring Council, which has in turn been distributed broadly to subscribers throughout the nation and beyond.

Now Available: SF Bay Shore Inventory: Mapping for Sea Level Rise Regional Dataset

SFEI and the San Francisco Estuary Partnership are proud to announce the release of the SF Bay Shore Inventory: Mapping for Sea Level Rise. This dataset provides a comprehensive and consistent picture of today’s Bay shore (up to MHHW + 10ft) for all nine Bay Area counties. The mapping captures features which affect flooding and flood routing (e.g., engineered levees, berms, embankments, roads, wetlands, etc.).

San Francisco Bay Shore Inventory: Mapping for Sea Level Rise Planning

Doehring, C.; Beagle, J.; Lowe, J.; Grossinger, R. M.; Salomon, M.; Kauhanen, P.; Nakata, S.; Askevold, R. A.; Bezalel, S. N. 2016. San Francisco Bay Shore Inventory: Mapping for Sea Level Rise Planning. SFEI Contribution No. 779. San Francisco Estuary Institute: Richmond, CA.

With rising sea levels and the increased likelihood of extreme weather events, it is important for regional agencies and local municipalities in the San Francisco Bay Area to have a clear understanding of the status, composition, condition, and elevation of our current Bay shore, including both natural features and built infrastructure.


The purpose of this Bay shore inventory is to create a comprehensive and consistent picture of today’s Bay shore features to inform regional planning. This dataset includes both structures engineered expressly for flood risk management (such as accredited levees) and features that affect flooding at the shore but are not designed or maintained for this purpose (such as berms, road embankments, and marshes). This mapping covers as much of the ‘real world’ influence on flooding and flood routing as possible, including the large number of non-accredited structures.
This information is needed to:

  1. identify areas vulnerable to flooding.
  2. identify adaptation constraints due to present Bay shore alignments; and
  3. suggest opportunities where beaches, wetlands, and floodplains can be maintained or restored and integrated into flood risk management strategies.

The primary focus of the project is therefore to inform regional planners and managers of Bay shore characteristics and vulnerabilities. The mapping presented here is neither to inform FEMA flood designation nor is it a replacement for site-specific analysis and design.


The mapping consists of two main elements:

  1. Mapping of Bay shore features (levees, berms, roads, railroads, embankments, etc.) which could affect flooding and flood routing.
  2. Attributing Bay shore features with additional information including elevations, armoring, ownership (when known), among others.

SFEI delineated and characterized the Bay shore inland to 3 meters (10ft) above mean higher high water (MHHW) to accommodate observed extreme water levels and the commonly used range of future sea level rise (SLR) scenarios. Elevated Bay shore features were mapped and classified as engineered levees, berms, embankments, transportation structures, wetlands, natural shoreline, channel openings, or water control structures. Mapped features were also attributed with elevation (vertical accuracy of <5cm reported in 30 meter (100ft) segments from LiDAR derived digital elevation models (DEMs), FEMA accreditation status, fortification (e.g., riprap, buttressing), frontage (e.g., whether a feature was fronted by a wetland or beach), ownership, and entity responsible for maintenance. Water control structures, ownership, and maintenance attributes were captured where data was available (not complete for entire dataset). The dataset was extensively reviewed and corrected by city, county, and natural resource agency staff in each county around the Bay. This report provides further description of the Bay shore inventory and methods used for developing the dataset. The result is a publicly accessible GIS spatial database.

SF Bay Shore Inventory GIS Data

The San Francisco Bay Shore Inventory: Mapping for Sea Level Rise dataset provides a comprehensive and consistent picture of today’s Bay shore (up to MHHW + 10ft) for all nine Bay Area counties. The mapping captures features which affect flooding and flood routing (e.g., engineered levees, berms, embankments, roads, wetlands, etc.) including accredited and non-accredited structures.  This project also identifies features fronted by wetlands and beaches and features that are artificially hardened (e.g., riprap).

Tahoe Aquatic Resource Inventory (TARI) Version 2.1 GIS Data

TARI (Tahoe Aquatic Resource Inventory) was established to meet regional needs for wetlands and stream monitoring. One primary objective was to apply standardized monitoring tools to ensure data comparability and consistent, documented quality. These data help agencies and organizations assess the extent and condition of wetlands in local watersheds and identify and prioritize opportunities for ecological restoration and enhancement in a watershed context.

EcoAtlas Habitat Projects Data, Web Service and REST API

California's EcoAtlas provides access to project tracking information for effective wetland management. The maps and tools can be used to create a complete picture of aquatic resources in the landscape by integrating stream and wetland maps, restoration information, and monitoring results with land use, transportation, and other information important to the state’s wetlands.

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