Library
Our library features many hundreds of entries.
To search among them, click "Search" below to pull down options, including filtering by document type, author, year, and keyword.
Find these options under "Show only items where." Or you can also sort by author, title, type, and year clicking the headings below.
Export 1849 results:
Filters: Filter is [Clear All Filters]
Status and Assessment of Selected Monitoring Programs in the San Francisco Esturary. SFEI Contribution No. 172. San Francisco Estuary Institute: Richmond, Ca. p 128.
1992. Hydrodynamic and Water Quality Model Calibration and Application in San Francisco Bay. SFEI Contribution No. 913. San Francisco Estuary Institute : Richmond, CA.
2018. ![application/pdf](/modules/file/icons/application-pdf.png)
Characterizing and quantifying nutrient sources, sinks and transformations in the Delta: synthesis, modeling, and recommendations for monitoring. SFEI Contribution No. 785. San Francisco Estuary Institute: Richmond, CA.
2015. ![application/pdf](/modules/file/icons/application-pdf.png)
![application/pdf](/modules/file/icons/application-pdf.png)
![application/pdf](/modules/file/icons/application-pdf.png)
![application/pdf](/modules/file/icons/application-pdf.png)
![application/pdf](/modules/file/icons/application-pdf.png)
![application/pdf](/modules/file/icons/application-pdf.png)
![application/pdf](/modules/file/icons/application-pdf.png)
Nutrient Moored Sensor Program: Year 1 Progress Update. SFEI: Richmond, CA.
2014. ![application/pdf](/modules/file/icons/application-pdf.png)
External Nutrient Loads to San Francisco Bay. SFEI Contribution No. 704. San Francisco Estuary Institute: Richmond, CA. p 98.
2014. ![application/pdf](/modules/file/icons/application-pdf.png)
Nutrient Stormwater Monitoring Results: WY2012 and WY2013. San Francisco Estuary Institute: Richmond, CA.
2014. ![application/pdf](/modules/file/icons/application-pdf.png)
Adult song sparrows do not alter their song repertoires. Ethology . SFEI Contribution No. 482.
2001. San Francisco Bay, CA: Comprehensive ecosystem evaluation needed to discern causes of chlorophyll a increases. In 2007 National Eutrophication Assessment. 2007 National Eutrophication Assessment. Washington, D.C. pp 113-114.
. 2007. ![application/pdf](/modules/file/icons/application-pdf.png)
Continuous Suspended Sediment Monitoring in South and Lower South San Francisco Bay Year Two (2023) Report. SFEI Contribution No. 1188. San Francisco Estuary Institute: Richmond, CA.
2024. This report provides a project update for year two of a three-year collaboration between the San Francisco Bay Nutrient Management Strategy (NMS), San Francisco Bay Regional Monitoring Program, and South Bay Salt Pond Restoration Project, to estimate high frequency suspended sediment concentration (SSC) in San Francisco Bay (SFB). Through its role in monitoring water quality in SFB, the NMS maintains an array of autonomous sondes that record high frequency (15-minute) water column turbidity, amongst a suite of other environmental parameters. Turbidity data from these monitoring sites was combined with discrete SSC samples to create a bay-wide turbidity-SSC calibration, allowing for estimates of high frequency SSC.
![application/pdf](/modules/file/icons/application-pdf.png)
Continuous Suspended Sediment Monitoring in South and Lower South San Francisco Bay Year One Report for 2022. SFEI Contribution No. 1135. San Francisco Estuary Institute: Richmond, CA.
2023. Suspended sediment concentration (SSC) is of critical importance to the management of San Francisco Bay (SFB), yet has not been a focus of sustained high frequency monitoring efforts in shallow shoal and slough habitats that make up a majority of the area of the South Bay (SB) and Lower South Bay (LSB). In this report, we provide a status update for year one of a three year collaboration between the San Francisco Bay Nutrient Management Strategy (NMS) and Regional Monitoring Program (RMP) with the South Bay Salt Pond Restoration Project (SBSPRP) to estimate high frequency SSC throughout the SB and LSB. As a part of this effort, 15-minute turbidity data from seven locations, collected as part of the NMS Moored Sensor Program (MSP), was paired with monthly discrete SSC sampling, with the goal of creating a robust turbidity-SSC calibration. An additional turbidity-specific sensor was also deployed and paired with discrete SSC sampling on the shoal near the Eden Landing Whale’s Tail. Here we present preliminary results from turbidity-SSC calibrations at these eight sites, which together span a range of environments (deep channel, shoal, slough) representative of SFB. Following completion of this calibration, resource managers will be able to convert continuous high-frequency turbidity data to SSC at locations throughout SB and LSB, greatly aiding future sediment-focused efforts
![application/pdf](/modules/file/icons/application-pdf.png)
An assessment of future tidal marsh resilience in the San Francisco Estuary through modeling and quantifiable metrics of sustainability. Frontiers in Environmental Science 10.
2022. Quantitative, broadly applicable metrics of resilience are needed to effectively manage tidal marshes into the future. Here we quantified three metrics of temporal marsh resilience: time to marsh drowning, time to marsh tipping point, and the probability of a regime shift, defined as the conditional probability of a transition to an alternative super-optimal, suboptimal, or drowned state. We used organic matter content (loss on ignition, LOI) and peat age combined with the Coastal Wetland Equilibrium Model (CWEM) to track wetland development and resilience under different sea-level rise scenarios in the Sacramento-San Joaquin Delta (Delta) of California. A 100-year hindcast of the model showed excellent agreement (R2 = 0.96) between observed (2.86 mm/year) and predicted vertical accretion rates (2.98 mm/year) and correctly predicted a recovery in LOI (R2 = 0.76) after the California Gold Rush. Vertical accretion in the tidal freshwater marshes of the Delta is dominated by organic production. The large elevation range of the vegetation combined with high relative marsh elevation provides Delta marshes with resilience and elevation capital sufficiently great to tolerate centenary sea-level rise (CLSR) as high as 200 cm. The initial relative elevation of a marsh was a strong determinant of marsh survival time and tipping point. For a Delta marsh of average elevation, the tipping point at which vertical accretion no longer keeps up with the rate of sea-level rise is 50 years or more. Simulated, triennial additions of 6 mm of sediment via episodic atmospheric rivers increased the proportion of marshes surviving from 51% to 72% and decreased the proportion drowning from 49% to 28%. Our temporal metrics provide critical time frames for adaptively managing marshes, restoring marshes with the best chance of survival, and seizing opportunities for establishing migration corridors, which are all essential for safeguarding future habitats for sensitive species.
A Synthesis of Microplastic Sources and Pathways to Urban Runoff. SFEI Contribution No. 1049. San Francisco Estuary Institute: Richmond, CA.
2021. California Senate Bill 1263 (2018) tasks the Ocean Protection Council (OPC) with leading statewide efforts to address microplastic pollution, and requires the OPC to adopt and implement a Statewide Microplastics Strategy related to microplastic materials that pose an emerging concern for ocean health. Key questions remain about the sources and pathways of microplastics, particularly to urban runoff, to inform an effective statewide microplastics management strategy. The OPC funded this work to inform these microplastics efforts. The purpose of this project was to build conceptual models that synthesize and integrate our current understanding of microplastic sources and pathways to urban runoff in order to provide future research priorities that will inform how best to mitigate microplastic pollution. Specifically, we developed conceptual models for cigarette butts and associated cellulose acetate fibers (Section 2), fibers other than cellulose acetate (Section 3), single-use plastic foodware and related microplastics (Section 4), and tire particles (Section 5), which were prioritized based on findings from the recent urban stormwater monitoring of microplastics in the San Francisco Bay region. Conceptual models specific to each of these particle types are valuable tools to refine source identification and elucidate potential source-specific data gaps and management options.
![application/pdf](/modules/file/icons/application-pdf.png)
Tire Wear: Emissions Estimates and Market Insights to Inform Monitoring Design. SFEI Contribution No. 1109. San Francisco Estuary Institute: Richmond, CA.
2023. Every vehicle on the road sheds tiny particles from its rubber tires into the environment. Tire wear is one of the top sources of microplastic releases to the environment. Tire wear also disperses tire-related chemicals into the environment. SFEI studies supported by the Regional Monitoring Program for Water Quality in San Francisco Bay (RMP) and others have found tire wear particles and tire-related chemicals in San Francisco Bay and its small tributaries, which drain the Bay watershed’s local urban areas. The RMP has developed a short-term multi-year plan of potential special studies (“Tires Strategy”) that responds to recent data revealing the magnitude of tire particle and chemical emissions and their potential toxicity to aquatic organisms.
This article is available upon request. Please message [email protected] for the materials.
Microplastics from Tire Particles in San Francisco Bay Factsheet. SFEI Contribution No. 1074. San Francisco Estuary Institute: Richmond, CA.
2022. As we drive our cars, our tires shed tiny particles
When it rains, stormwater runoff carries tire particles—and the toxic chemicals they contain—from city streets and highways to storm drains and fish habitat in creeks and estuaries like San Francisco Bay. Stormwater washes trillions of tire particles into the Bay each year.
How do tires affect wildlife?
A recent study found a highly toxic chemical (“6PPD-quinone”) derived from vehicle tires in Bay Area stormwater at levels that are lethal to coho salmon. New data indicate that steelhead, a salmon species still migrating through the Bay to surrounding watersheds, are also sensitive to this chemical.
![application/pdf](/modules/file/icons/application-pdf.png)
Field Testing Report: California Trash Monitoring Methods. SFEI Contribution No. 1026. San Francisco Estuary Institute: Richmond, Calif.
2021. Trash has received renewed focus in recent years as policy makers, public agencies, environmental organizations, and community groups have taken many steps towards trash quantification and management across California. The range of management actions is matched by the diversity of monitoring approaches, designed to determine key attributes associated with trash pollution on California’s lands and in its waterways.
This report describes the field testing associated with a project designed to validate the accuracy, precision, and practicality of several trash monitoring methods, practiced across the state. Additionally, the project measured the efficacy of a novel monitoring method designed to detect trash via remote sensing and machine learning. Readers will find details about each respective method -- the specific approach to
landscape characterization, the qualitative or quantitative measures undertaken, the team-based quality assurance for data collection -- as well as the approach that the testing team adopted to ensure efficient, accurate, and useful validation of the methods.
Because the validation efforts integrated multiple methods, using multiple teams at a selection of common sites, the field testing report yields useful statistical information not only about each method individually, but about the comparability of the results. The report illustrates the
correlation factor associated with different forms of trash metrics, associated with different methods practiced on the same assessment sites. The results illustrated a generally high degree of correlation among different methods, which promises opportunities to compare results meaningfully across methods.
Furthermore, this field testing report provides quantitative measures to illustrate the repeatability of each method, the differences and insights yielded by assessment site sizing criteria varying among methods, the transferability / teach-ability of each method among trash monitoring practitioners, and how the degrees of accuracy might aid programs in performing mass balance analysis of known sources
to trash detected in a given site.
Regarding innovation, the project team leveraged multiple on-the-ground methods and special testing scenarios to compare conventional and novel (aerial) assessments to measure the relative accuracy and precision of this emergent technology that might address some of the resource constraints that currently limit the broader or more frequent deployment of conventional trash assessment methods. The analyses captured in this field testing report offer specific quantitative measures of the accuracy (bias), precision (repeatability), practicality and cost associated with each method. This information is subsequently used to inform a companion summary analysis found in the Trash Monitoring Playbook, which is designed to evaluate the applicability of the monitoring methods to address classes of
monitoring questions.
![application/pdf](/modules/file/icons/application-pdf.png)
California Trash Monitoring Methods and Assessments Playbook. SFEI Contribution No. 1025. San Francisco Estuary Institute: Richmond, Calif.
2021. As municipalities and water-quality regulatory agencies have implemented programs and policies to improve management of the trash loading to storm drain conveyances, there has been increased interest in using a common set of methods to quantify the effectiveness of management actions. To create a foundation for developing a consistent, standardized approach to trash monitoring statewide, the project team performed a method comparison analysis, based on two seasons of fieldwork. This analysis facilitated the assessment of the accuracy, repeatability, and efficiency of some already developed trash monitoring methodologies already in use, as well as help to investigate a new, innovative method (cf. Fielding Testing Report on trashmonitoring.org). Methods developed by the Bay Area Stormwater Management Agencies Association (BASMAA) for use in the San Francisco Bay Area were compared to methods developed by the Southern California Stormwater Monitoring Coalition (SMC) for use in coastal southern California. One of the chief goals of these comparisons was to understand the similarities and differences between the already existing methods for detecting, quantifying, and characterizing trash in selected environments. Readers will find that the data bear out remarkable levels of accuracy and precision with quantitative metrics that help to align methods and management concerns. Furthermore, the degree of correlation among tested methods were especially high, offering greater opportunities for inter-method comparisons.
The findings of this project are intended for use by public agencies, non-profit organizations, private consultants, and all of their various partners in informing a statewide effort to adopt rigorous, standardized monitoring methods to support the State Water Board’s Trash Amendments. Over the next couple of decades, such public mandates will require all water bodies in California to achieve water quality objectives for trash.
![application/pdf](/modules/file/icons/application-pdf.png)
Baylands Ecosystem Habitat Goals. SFEI Contribution No. 330. U. S. Environmental Protection Agency, San Francisco, Calif./S.F. Bay Regional Water Quality Control Board, Oakland, Calif. p 328.
1999. ![application/pdf](/modules/file/icons/application-pdf.png)
Recommended Best Practices for Collecting, Analyzing, and Reporting Microplastics in Environmental Media: Lessons Learned from Comprehensive Monitoring of San Francisco Bay. Journal of Hazardous Materials . SFEI Contribution No. 1023.
2020. Microplastics are ubiquitous and persistent contaminants in the ocean and a pervasive and preventable threat to the health of marine ecosystems. Microplastics come in a wide variety of shapes, sizes, and plastic types, each with unique physical and chemical properties and toxicological impacts. Understanding the magnitude of the microplastic problem and determining the highest priorities for mitigation require accurate measures of microplastic occurrence in the environment and identification of likely sources. The field of microplastic pollution is in its infancy, and there are not yet widely accepted standards for sample collection, laboratory analyses, quality assurance/quality control (QA/QC), or reporting of microplastics in environmental samples. Based on a comprehensive assessment of microplastics in San Francisco Bay water, sediment, fish, bivalves, stormwater, and wastewater effluent, we developed recommended best practices for collecting, analyzing, and reporting microplastics in environmental media. We recommend factors to consider in microplastic study design, particularly in regard to site selection and sampling methods. We also highlight the need for standard QA/QC practices such as collection of field and laboratory blanks, use of methods beyond microscopy to identify particle composition, and standardized reporting practices, including suggested vocabulary for particle classification.
Summary for Managers: Non-targeted Analysis of Stormwater Runoff following the 2017 Northern San Francisco Bay Area Wildfires. SFEI Contribution No. 1045. San Francisco Estuary Institute: Richmond, CA.
2021. Urban-wildland interfaces in the western US are increasingly threatened by the growing number and intensity of wildfires, potentially changing the type of contaminants released into the landscape as more urban structures are burned. In October 2017, the Tubbs, Nuns, and Atlas wildfires devastated communities in Northern California (Figure 1), burning over 8,500 buildings and 210,000 acres of land in the span of 24 days (California Department of Forestry and Fire Protection 2017). Together, these wildfires were the most destructive and costliest fires in the history of California at that time (California Department of Forestry and Fire Protection 2019).
Post-wildfire monitoring efforts in impacted watersheds typically focus on a few well-established water quality and chemistry concerns (McKee et al. 2018). Few studies go beyond these limited targeted analyses and attempt to identify the multitude of other fire-related compounds that are released from or form as the result of combustion of residential, commercial, and industrial structures in urban-wildland interfaces. Some of these unidentified compounds may be toxic to aquatic ecosystems or human health, and may pose risks to wildlife or in water bodies that act as drinking water supplies to nearby communities.
![application/pdf](/modules/file/icons/application-pdf.png)
Microparticles, Microplastics, and PAHs in Bivalves in San Francisco Bay. SFEI Contribution No. 976. San Francisco Estuary Institute: Richmond, CA.
2020. California mussels (Mytilus californianus and hybrid Mytilus galloprovincialis / Mytilus trossulus) and Asian clams (Corbicula fluminea) were collected at multiple sites in San Francisco Bay. Mussels from a reference area with minimal urban influence were also deployed in cages for 90 days at multiple sites within the Bay prior to collection.Mussels from the reference time zero site, Bodega Head, had some of the lowest microparticle levels found in this study, along with resident clams from the San Joaquin and Sacramento Rivers and mussels transplanted to Pinole Point. The highest concentrations of microparticles were in mussels transplanted to Redwood Creek and Coyote Creek. The results of this study and current literature indicate that bivalves may not be good status and trends indicators of microplastic concentrations in the Bay unless the interest is in human health exposure via contaminated bivalve consumption.
![application/pdf](/modules/file/icons/application-pdf.png)
Trace metal speciation in marine waters by competitive ligand equilibration/solvent extraction: theory and practice, University of California: Santa Cruz.
1994. Contaminants of Emerging Concern in San Francisco Bay: A Strategy for Future Investigations 2020 Update. SFEI Contribution No. 1007. San Francisco Estuary Institute: Richmond, CA.
2020. This 2020 CEC Strategy Update is a brief summary document that describes the addition of recently monitored CECs to the tiered risk-based framework. Reviews of findings relevant to San Francisco Bay are provided, as is a discussion of the role of environmental persistence in classifying CECs within the framework. The Strategy is a living document that guides RMP special studies on CECs, assuring continued focus on the issues of highest priority to protecting the health of the Bay. A key focus of the Strategy is a tiered risk-based framework that guides future monitoring proposals. The Strategy also features a multi-year plan indicating potential future research priorities.
![application/pdf](/modules/file/icons/application-pdf.png)
Concentrations of Select Commonly Used Organic UV Filters in San Francisco Bay Wastewater Effluent. SFEI Contribution No. 1111. San Francisco Estuary Institute.
2023. Ultraviolet (UV) radiation filters are chemicals designed to absorb or reflect harmful solar radiation, and are used in products as diverse as personal care products (e.g., sunscreens, lotions, and cosmetics) and industrial products (e.g., insecticides, plastics, and paints) to mitigate deleterious effects of sunlight and extend product life. Widespread use of UV filters has led to extensive detections in the environment, and have raised concerns about impacts to aquatic ecosystems. In particular, several organic UV filters that are commonly used in sunscreen have been identified as neurotoxins and endocrine disruptors. To help understand the presence of organic UV filters and their potential to pose risks in San Francisco Bay, three of the most commonly used organic UV filters used in sunscreen (avobenzone, octinoxate, oxybenzone) as well as select metabolites were analyzed in municipal wastewater effluent from the six largest publicly-owned treatment works (POTWs) discharging into the Bay. Note that organic UV filters is a broad chemical class, and other constituents within this class were not included in this study.
Only two of the three organic UV filters analyzed were detected in effluent, avobenzone (detected in 70% of samples) and oxybenzone (83%), with median concentrations of 28 and 86 ng/L, and 90th percentile concentrations of 77 and 209 ng/L, respectively. Concentrations of avobenzone and oxybenzone varied widely across facilities, though there were no clear outlier values. The two POTWs utilizing advanced secondary treatment had the lowest concentrations of any facilities, which may indicate increased removal from these processes. Overall, these concentrations were higher than those reported in one other study of wastewater effluent in the US. An increasing body of literature will help to fully understand the occurrence and fate of organic UV filters in wastewater.
![application/pdf](/modules/file/icons/application-pdf.png)
Study of Per- and Polyfluoroalkyl Substances in Bay Area POTWs: Phase 1, Sampling and Analysis Plan. SFEI Contribution No. 1020. San Francisco Estuary Institute: Richmond, CA.
2021. ![application/pdf](/modules/file/icons/application-pdf.png)
2023 Bay Prey Fish and Near-field / Margins Sediment Sampling and Analysis Plan. SFEI Contribution No. 1141. San Francisco Estuary Institute: Richmond, CA.
2023. This is a sampling and analysis plan for the Bay Status and Trends (S&T) Prey Fish and Near-field / Margins Sediment monitoring for the Regional Monitoring Program for Water Quality in San Francisco Bay (RMP). Bay margins are defined by the RMP as extending from Mean Higher High Water (MHHW) to 1 foot below Mean Lower Low Water (MLLW). These mud flats and adjacent shallow areas of the Bay are productive and highly utilized by biota of interest (humans and wildlife). Near-field stations are located near watershed inputs in the Bay. Prey fish are a key matrix to monitoring the status and impacts of contaminants, especially near margin areas where they have shown strong contamination signals in previous RMP studies. This monitoring design provides a spatially-distributed characterization of contaminant concentrations in fish and sediment found within the margins of Central Bay, South Bay, and Lower South Bay. This study builds on previous S&T efforts to characterize surface sediment contamination across the Bay while piloting routine monitoring of prey fish. Additional samples outside of S&T will be collected for special studies. A subset of samples will be archived for potential future analysis of emerging contaminants or other analyte groups.
![application/pdf](/modules/file/icons/application-pdf.png)
Summary and Evaluation of Bioaccumulation Tests for Total Polychlorinated Biphenyls (PCBs) Conducted by San Francisco Bay Dredging Projects. SFEI Contribution No. 1092. San Francisco Estuary Institute: Richmond, California.
2022. The Dredged Material Management Office (DMMO) is responsible for annually approving dredging and disposal of millions of cubic yards of sediment to maintain safe navigation in San Francisco Bay. Dredged sediment is characterized for physical, chemical, and biological characteristics to ensure sediment disposed of in the Bay or at beneficial use locations does not cause adverse environmental impacts. Bioaccumulation thresholds and total maximum daily loads (TMDLs) have been established for several contaminant classes, including PCBs, and are used by the DMMO to determine whether sediment contaminant levels trigger subsequent bioaccumulation testing. Sediment with contaminant concentrations above any TMDL levels cannot be disposed of within the Bay but may be further evaluated for upland reuse and ocean disposal. The objective of this study was to evaluate PCB bioaccumulation data from navigational dredging projects to assess the existence of correlations between sediment chemistry and bioaccumulation test results. The motivation for this study was to determine whether the current PCB bioaccumulation trigger is effective in differentiating sediment bioaccumulation concerns. The DMMO may use the results of this study to inform evaluation requirements for PCBs, particularly in support of modifying the terms of the Long-term Management Strategy for San Francisco Bay (LTMS) programmatic Essential Fish Habitat (EFH) agreement concerning PCB bioaccumulation testing.
![application/pdf](/modules/file/icons/application-pdf.png)
PFAS in San Francisco Bay Water. SFEI Contribution No. 1094. San Francisco Estuary Institute: Richmond, CA.
2022. Per- and polyfluoroalkyl substances (PFAS), a family of thousands of synthetic, fluorine-rich compounds commonly referred to as “forever chemicals,” are known for their thermal stability, non-reactivity, and surfactant properties. These unique compounds have widespread uses across consumer, commercial, and industrial products, resulting in widespread occurrence in the environment and wildlife across the globe. This study analyzed ambient surface water in San Francisco Bay for 40 PFAS to discern the occurrence, fate, and potential risks to ecological and human health.
Eleven of 40 PFAS were detected in ambient surface water collected in 2021 from 22 sites in the Bay. Seven PFAS (PFPeA, PFHxA, PFHpA, PFOA, PFBS, PFHxS, and PFOS), were found in at least 50% of samples. PFHxA and PFOA were the most frequently detected analytes (detection frequencies of 86% and 77%, respectively). PFPeA and PFHxA were generally found at the highest concentrations across sites, with median and maximum concentrations of 1.6 and 4.8 ng/L and 1.5 and 5.7 ng/L, respectively. Pairwise Spearman's correlations revealed strong positive correlations (p <0.001; r > 0.77) among the seven PFAS detected in at least 50% of sites, suggesting significant similarities between their sources, pathways, and/or fate in the environment. PFBA, PFNA, PFDA, and 6:2 FTS were found at a limited number of sites in the Bay. 6:2 FTS was found at a single site at 14 ng/L, the highest concentration of any individual PFAS in the Bay. The sums of detected PFAS for all sites had median and maximum concentrations of 10 and 29 ng/L, respectively.
![application/pdf](/modules/file/icons/application-pdf.png)
Bisphenols in San Francisco Bay: Wastewater, Stormwater, and Margin Sediment Monitoring. SFEI Contribution No. 1093. San Francisco Estuary Institute: Richmond, CA.
2022. Bisphenols are a class of synthetic, mobile, endocrine-disrupting chemicals. Bisphenol A (BPA), the most well-studied bisphenol, is produced and used in vast quantities worldwide—especially in polycarbonate plastics and as a polymer additive. Recently, some manufacturers have begun using alternative bisphenol compounds, such as bisphenol F (BPF) and bisphenol S (BPS). These uses of bisphenols have led to widespread bisphenol detections in the environment and wildlife. The present study examined wastewater effluent in the San Francisco Bay Area and San Francisco Bay sediment samples for 17 bisphenols. The effluent samples were compared to available stormwater runoff data to better understand bisphenol transport, fate, and potential risks to wildlife.
![application/pdf](/modules/file/icons/application-pdf.png)
Spatial trends and impairment assessment of mercury in sport fish in the Sacramento-San Joaquin Delta Watershed. Environmental Pollution . SFEI Contribution No. 575.
2009. ![application/pdf](/modules/file/icons/application-pdf.png)
The Relationship between Landscape Features and Sport Fish Mercury in the Sacramento-San Joaquin Delta Watershed. SFEI Contribution No. 534. San Francisco Estuary Institute.
2007. ![application/pdf](/modules/file/icons/application-pdf.png)
The Influence of Chemical and Physical Factors on Macrobenthos in the San Francisco Estuary. SFEI Contribution No. 543.
2008. ![application/pdf](/modules/file/icons/application-pdf.png)
Statistical Methods Development and Sampling Design Optimization to Support Trends Analysis for Loads of Polychlorinated Biphenyls from the Guadalupe River in San Jose, California, USA. SFEI Contribution No. 876. Applied Marine Sciences: Livermore, CA.
2018. ![application/pdf](/modules/file/icons/application-pdf.png)
Power Analysis and Optimization of the RMP Status and Trends Program. SFEI Contribution No. 555.
2008. ![application/pdf](/modules/file/icons/application-pdf.png)
Optimizing sampling methods for pollutant loads and trends in San Francsico Bay urban stormwater monitoring. San Francisco Estuary Institute: Oakland, CA.
2010. ![application/pdf](/modules/file/icons/application-pdf.png)
California Bay-Delta Authority Fish Mercury Project, Year 2 (2006) Annual Report. Sport Fish Sampling and Analysis. SFEI Contribution No. 535. San Francisco Estuary Institute.
2007. ![application/pdf](/modules/file/icons/application-pdf.png)
Conceptual Foundations for Modeling Bioaccumulation in San Francisco Bay. SFEI: Richmond, CA. p 88.
2012. ![application/pdf](/modules/file/icons/application-pdf.png)
Empirical estimation of biota exposure range for calculation of bioaccumulation parameters. Integrated Environmental Assessment and Management 5 . SFEI Contribution No. 573.
2009. ![application/pdf](/modules/file/icons/application-pdf.png)
Spatial Patterns of Sediment Contaminant Mixtures in San Francisco Bay. SFEI Contribution No. 450.
2005. Risk-based management framework for microplastics in aquatic ecosystems. Microplastics and Nanoplastics 2 (17).
2022. Microplastic particles (MPs) are ubiquitous across a wide range of aquatic habitats but determining an appropriate level of risk management is hindered by a poor understanding of environmental risk. Here, we introduce a risk management framework for aquatic ecosystems that identifies four critical management thresholds, ranging from low regulatory concern to the highest level of concern where pollution control measures could be introduced to mitigate environmental emissions. The four thresholds were derived using a species sensitivity distribution (SSD) approach and the best available data from the peer-reviewed literature. This included a total of 290 data points extracted from 21 peer-reviewed microplastic toxicity studies meeting a minimal set of pre-defined quality criteria. The meta-analysis resulted in the development of critical thresholds for two effects mechanisms: food dilution with thresholds ranging from ~ 0.5 to 35 particles/L, and tissue translocation with thresholds ranging from ~ 60 to 4100 particles/L. This project was completed within an expert working group, which assigned high confidence to the management framework and associated analytical approach for developing thresholds, and very low to high confidence in the numerical thresholds. Consequently, several research recommendations are presented, which would strengthen confidence in quantifying threshold values for use in risk assessment and management. These recommendations include a need for high quality toxicity tests, and for an improved understanding of the mechanisms of action to better establish links to ecologically relevant adverse effects.
Estuary News RMP Insert 2013. Estuary News. San Francisco Estuary Institute: Richmond, CA.
2013. ![application/pdf](/modules/file/icons/application-pdf.png)
Adaptation Planning for the Bay Point Operational Landscape Unit. SFEI Contribution No. 1078. San Francisco Estuary Institute: Richmond, CA.
2022. ![application/pdf](/modules/file/icons/application-pdf.png)
Conceptual Understanding of Fine Sediment Transport in San Francisco Bay. SFEI Contribution No. 1114. San Francisco Estuary Institute: Richmond, CA.
2023. Sediment is a lifeblood of San Francisco Bay (Bay). It serves three key functions: (1) create and maintain tidal marshes and mudflats, (2) transport nutrients and contaminants, and (3) reduce impacts from excessive human-derived nutrients in the Bay. Because of these important roles, we need a detailed understanding of sediment processes in the Bay.
This report offers a conceptual understanding of how fine-grained sediment (i.e. silt and finer, henceforth called fine sediment) moves around at different scales within the Bay, now and into the future, to synthesize current knowledge and identify critical knowledge gaps. This information can be used to support Bay sediment management efforts and help prioritize funding for research and monitoring. In particular, this conceptual understanding is designed to inform future San Francisco Bay Regional Monitoring Program (RMP) work under the guidance of the Sediment Workgroup of the RMP for Water Quality in San Francisco Bay, which brings together experts who have worked on many different components of the landscape, including watersheds and tributaries, marshes and mudflats, beaches, and the open Bay. This report describes sediment at two scales: a conceptual understanding of open-Bay sediment processes at the Bay and subembayment scale (Chapter 2); and a conceptual understanding of sediment processes at the baylands scale (Chapter 3). Chapter 4 summarizes the key knowledge gaps and provides recommendations for future studies.
![application/pdf](/modules/file/icons/application-pdf.png)
Resilient Landscape Vision for the Calabazas Creek, San Tomas Aquino Creek, and Pond A8 Area: Bayland-Creek Reconnection Opportunities. SFEI Contribution No. 870. San Francisco Estuary Institute-Aquatic Science Center: Richmond, CA. p 40.
2018. This report proposes a multi-faceted redesign of the South San Francisco Bay shoreline at the interface with Calabazas and San Tomas Aquino creeks. Recognizing the opportunities presented by changing land use and new challenges, such as accelerated sea-level rise, we explore in this report a reconfigured shoreline that could improve ecosystem health and resilience, reduce maintenance costs, and protect surrounding infrastructure.
![application/pdf](/modules/file/icons/application-pdf.png)
![application/pdf](/modules/file/icons/application-pdf.png)
Special Study on Bulk Density. SFEI Contribution No. 975. San Francisco Estuary Institute: Richmond, CA. p 43.
2020. Sediment bulk density is the total mass of mineral and organic sediment within a defined volume. It is a key variable in many research questions pertaining to Bay sediment studies but one that is often poorly quantified and can be misinterpreted. The motivation for this report comes from a recommendation by Schoellhamer et al. (2018) to compile more accurate estimates of bulk density of Bay sediments to convert between volume and mass with a higher level of certainty. Through funding and guidance from the Bay Regional Monitoring Program Sediment Work Group, this report is a first step towards compiling the available data on sediment bulk densities across Bay habitats and along salinity gradients to provide better information for resource managers and others working on sediment-related issues. This report discusses the need to know the bulk density of Bay soils to convert between sediment mass and soil volume; clarifies general definitions and common points of confusion related to sediment bulk density; compiles primary sources of bulk density measurements, secondary sources of bulk density estimates, and standard engineering estimates of bulk density for different habitats in San Francisco Bay; and, provides a database where practitioners can track, analyze, and share bulk density measurements.
![application/pdf](/modules/file/icons/application-pdf.png)
Concentrations and Loads of Mercury Species in the Guadalupe River, San Jose, California: Water Year 2010. San Francisco Estuary Institute: Oakland.
2010. ![application/pdf](/modules/file/icons/application-pdf.png)
Pinole Creek Watershed Sediment Source Assessment. A technical report of the Regional Watershed Program, San Francisco Estuary Institute (SFEI), Oakland, California. (report only -- no appendix). SFEI Contribution No. 316. San Francisco Estuary Institute: Oakland, CA.
2005. ![application/pdf](/modules/file/icons/application-pdf.png)
RMP Small Tributaries Loading Strategy. San Francisco Estuary Institute: Richmond, CA.
2009. ![application/pdf](/modules/file/icons/application-pdf.png)
2000.
The Transport of contaminants to San Francisco Bay by stormwater. SFEI Contribution No. 344. Vol. 9, pp 5-7.
2000. Intra - and inter-annual export of nitrogen and phosphorus in the sub-tropical Richmond River catchment, Australia. Hydrological Processes 14, 1787-1809.
2000. The concentration and load of PCBs, OC pesticides, and mercury associated with suspended sediments in the lower Guadalupe River, San Jose, California. A Technical Report of the Regional Watershed Program. SFEI Contribution No. 86. San Francisco Estuary Institute: Oakland, CA.
2004. ![application/pdf](/modules/file/icons/application-pdf.png)
Summary of existing information in the watershed of Sonoma Valley in relation to the Sonoma Creek Watershed Restoration Study and recommendations on how to proceed. SFEI Contribution No. 345. San Francisco Estuary Institute.
2000. Results of the Estuary Interface Pilot Study, 1996-1999, Final Report. (Technical Report of the Sources Pathways and Loading Work Group (SPLWG) of the San Francisco Estuary Regional Monitoring Program for Trace Substances (RMP)). SFEI Contribution No. 50. San Francisco Estuary Institute: Oakland, CA.
2002. ![application/pdf](/modules/file/icons/application-pdf.png)
Estimates of suspended sediment entering San Francisco Bay from the Sacramento and San Joaquin Delta, San Francisco Bay, California. J. of Hydrology . SFEI Contribution No. 460.
2006. ![application/pdf](/modules/file/icons/application-pdf.png)
San Pedro Creek Watershed Sediment Source Analysis, Volume III: Tributary sediment source assessment. SFEI Contribution No. 87. San Francisco Estuary Institute: Oakland, CA.
2004. ![application/pdf](/modules/file/icons/application-pdf.png)
Contaminant contributions from the Guadalupe River and Coyote Creek watersheds to the lower South San Francisco Bay. Abstracts of the 5th Biannual State of the Estuary Conference – San Francisco Estuary: Achievements, trends and the future.
2001. Building a regionally consistent base map for the Bay Area: The National Hydrography Data Set. Abstracts of the 5th Biannual State of the Estuary Conference – San Francisco Estuary: Achievements, trends and the future, pp 108.
2001. Guadalupe River Mercury Concentrations and Loads During the Large Rare January 2017 Storm. SFEI Contribution No. 837. San Francisco Estuary Institute : Richmond, CA.
2018. ![application/pdf](/modules/file/icons/application-pdf.png)
2002.
Estimation of Total Mercury Fluxes Entering San Francisco Bay from the Sacramento and San Joaquin River Watersheds (Technical Memo). SFEI Contribution No. 260. San Francisco Estuary Institute: Oakland, CA.
2002. ![application/pdf](/modules/file/icons/application-pdf.png)
Comparison of sediment supply to San Francisco Bay from watersheds draining the Bay Area and the Central Valley of California. Marine Geology Special Issue: A multi-discipline approach for understanding sediment transport and geomorphic evolution in an estuarine-coastal system.
2013. Sources, Pathways, and Loadings: 5-Year Work Plan (2005-2009). SFEI Contribution No. 406. San Francisco Estuary Institute. p 25.
2005. ![application/pdf](/modules/file/icons/application-pdf.png)
Pollutants of concern (POC) loads monitoring data progress report, water year (WY) 2012. SFEI: Richmond, CA.
2013. ![application/pdf](/modules/file/icons/application-pdf.png)
Pathogen Occurrence and Analysis in Relation to Water Quality Attainment in San Francisco Bay Area Watersheds. SFEI Contribution No. 128.
2002. ![application/pdf](/modules/file/icons/application-pdf.png)
Pinole Creek Sediment Source Assessment: Pavon Creeks Sub-basin. SFEI Contribution No. 515. San Francisco Estuary Institute. p 67.
2006. ![application/pdf](/modules/file/icons/application-pdf.png)
![application/pdf](/modules/file/icons/application-pdf.png)
Concentrations and Loads of Trace Contaminants in the Zone 4 Line A Small Tributary, Hayward, California: Water Year 2007. SFEI Contribution No. 563. San Francisco Estuary Institute: Oakland,Ca.
2009. ![application/pdf](/modules/file/icons/application-pdf.png)